PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1769
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 227aa    MW: 25914 Da    PI: 9.715
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1769genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix61.12.7e-1919107186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W+k+e+l+Liea++e++  lr ++lk+ +W +vs+++   +     +s++qC++k+e+l++r++++k+++ k++ + ss++ +f  l+
  Gh_D08G1769  19 CWSKEETLVLIEAYKEKWFVLRCQNLKASDWGAVSSAVsfaSGPETMKSSVQCRHKIEQLRQRFRAEKQRSLKNRGKFSSSWDLFPLLD 107
                  8*************************************9866666789*************************99**********9886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.5E-1918109No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MATPQSYSAT ATQRVAPPCW SKEETLVLIE AYKEKWFVLR CQNLKASDWG AVSSAVSFAS  60
GPETMKSSVQ CRHKIEQLRQ RFRAEKQRSL KNRGKFSSSW DLFPLLDSMN FVPVSVNGSA  120
DQENLYYNKD GGFCWKLKNH EKIYGNLGPE LGVKNGNGGV KRGMDPVEEM VSSIKLLAEG  180
FVRMEKMKIE MVKDVEKTRM KMEMKHNEMI LESRQKIMDV FAKALLE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.211615e-54boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007039670.11e-61Alcohol dehydrogenase transcription factor Myb/SANT family protein, putative
TrEMBLA0A061G3R01e-61A0A061G3R0_THECC; Alcohol dehydrogenase transcription factor Myb/SANT family protein, putative
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104831828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.14e-21Trihelix family protein